Analyze your data file
Download and fill this Excel File with your data, then upload it to search for similar profiles in SITVIT Bovis. If you are using a recent version of Microsof Excel, please convert your file to Excel 2003 or XLS format (XLSX files are not allowed in this analysis).
Make sure that you are strictly respecting the good format for all Spoligotype and MIRU-VNTRs markers.
If you entered your spoligotype patterns at the binary format (o/n), it will be automatilcally converted into the octal format and vice versa. Note that the order of loci for MIRU-VNTRs are as follows:
- 5-locus Exact Tandem Repeats (ETRs) or VNTR order: A, B, C, D, and E.
- MIRU12 order: MIRU 2-4-10-16-20-23-24-26-27-31-39- and 40.
- MIRU15 order: MIRU 4, 10, 16, 26, 31, and 40, ETR-A, ETR-C, QUB-11b, QUB-26, QUB-4156, Mtub04, Mtub21, Mtub30, and Mtub39.
Furthermore, the MIRU-VNTRs loci labeled by letters A, B, C ... indicate respectively 10, 11, or 12 etc... number of copies.
Correspondance nomenclature between designations of MIRUs/ETRs/QUBs/Mtubs and VNTRs loci is visible as an Excel File or as a PNG figure.
Although 24-loci MIRU_VNTRs were not taken into account in this database, we strongly encourage contributors to submit their data with all 24-loci MIRU-VNTRs scheme, by referring to "STIVIT2 Submit page".
Analysis of your File
Not defined (ND) statement indicates that a spoligotype or MIRU pattern does not exist in our database (i.e. this profile could be either null, an orphan, or a new pattern not yet reported in our database).
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