Preliminary list linking M. bovis WGS
#ID | Spoligotype (SpoTyping) | Spoligo (octal) | 24-loci MIRU-VNTR | 15-loci MIRU-VNTR | 12-loci MIRU-VNTR | Lineage (SpolLineages) | Spoligotype International Type (SIT) | SBnumber (Mbovis) | Resistance (TBProfiler) | Lineage (TBProfiler) | Freschi2020 | Lipworth2019 | Release_Date | Bases (bp) | TaxonomyID | Scientific_Name (or species) | Center_Name | Consent | Country | Library_Strategy | Library_Selection | Library_Source | Library_Layout | Platform | Model | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SRR13015794 | ■■□■■■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■□■□□□□□ | 676773677777200 | 222413252322445231144442 | 224532452311442 | 222413252322 | BOV_1 | 698 | SB0295 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 01/03/2021 00:10 | 484276812 | 1765 | Mycobacterium tuberculosis variant bovis | EMBRAPA BEEF CATTLE | public | Brazil | WGS | PCR | GENOMIC | PAIRED | ILLUMINA | Illumina HiSeq 2500 | |
SRR13015795 | ■■□■■■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■□■□□□□□ | 676773677777200 | 222333152324145231454332 | 223534152314532 | 222333152324 | BOV_1 | 698 | SB0295 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 01/03/2021 00:10 | 485490250 | 1765 | Mycobacterium tuberculosis variant bovis | EMBRAPA BEEF CATTLE | public | Brazil | WGS | PCR | GENOMIC | PAIRED | ILLUMINA | Illumina HiSeq 2500 | |
SRR13015796 | ■■□■■■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■□■□□□□□ | 676773677777200 | 222335253322445221343442 | 223532452213442 | 222335253322 | BOV_1 | 698 | SB0295 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 01/03/2021 00:10 | 571607344 | 1765 | Mycobacterium tuberculosis variant bovis | EMBRAPA BEEF CATTLE | public | Brazil | WGS | PCR | GENOMIC | PAIRED | ILLUMINA | Illumina HiSeq 2500 | |
SRR13015797 | ■■□■■■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■□■□□□□□ | 676773677777200 | 222523353323445221343432 | 225533452213442 | 222523353323 | BOV_1 | 698 | SB0295 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 01/03/2021 00:10 | 663540195 | 1765 | Mycobacterium tuberculosis variant bovis | EMBRAPA BEEF CATTLE | public | Brazil | WGS | PCR | GENOMIC | PAIRED | ILLUMINA | Illumina HiSeq 2500 | |
SRR13015798 | ■■□■■■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■□■□□□□□ | 676773677777200 | 222525353324445231344442 | 225534452313442 | 222525353324 | BOV_1 | 698 | SB0295 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 01/03/2021 00:10 | 497372971 | 1765 | Mycobacterium tuberculosis variant bovis | EMBRAPA BEEF CATTLE | public | Brazil | WGS | PCR | GENOMIC | PAIRED | ILLUMINA | Illumina HiSeq 2500 | |
SRR13015799 | ■■□■■■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■□■□□□□□ | 676773677777200 | 222435452323455231454442 | 224533452314542 | 222435452323 | BOV_1 | 698 | SB0295 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 01/03/2021 00:10 | 481854027 | 1765 | Mycobacterium tuberculosis variant bovis | EMBRAPA BEEF CATTLE | public | Brazil | WGS | PCR | GENOMIC | PAIRED | ILLUMINA | Illumina HiSeq 2500 | |
SRR13015800 | ■■□■■■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■□■□□□□□ | 676773677777200 | 222526354323446231454342 | 225533462314532 | 222526354323 | BOV_1 | 698 | SB0295 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 01/03/2021 00:10 | 433453504 | 1765 | Mycobacterium tuberculosis variant bovis | EMBRAPA BEEF CATTLE | public | Brazil | WGS | PCR | GENOMIC | PAIRED | ILLUMINA | Illumina HiSeq 2500 | |
SRR13015801 | ■■□■■■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■□■□□□□□ | 676773677777200 | 232523353321445231344422 | 325531452313442 | 232523353321 | BOV_1 | 698 | SB0295 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 01/03/2021 00:10 | 486091395 | 1765 | Mycobacterium tuberculosis variant bovis | EMBRAPA BEEF CATTLE | public | Brazil | WGS | PCR | GENOMIC | PAIRED | ILLUMINA | Illumina HiSeq 2500 | |
SRR13015802 | ■■□■■■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■□■□□□□□ | 676773677777200 | 232435352424145221344422 | 324544152213442 | 232435352424 | BOV_1 | 698 | SB0295 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 01/03/2021 00:10 | 520472997 | 1765 | Mycobacterium tuberculosis variant bovis | EMBRAPA BEEF CATTLE | public | Brazil | WGS | PCR | GENOMIC | PAIRED | ILLUMINA | Illumina HiSeq 2500 | |
SRR13015803 | ■■□■■■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■□■□□□□□ | 676773677777200 | 232325153422445221345422 | 323542452213442 | 232325153422 | BOV_1 | 698 | SB0295 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 01/03/2021 00:10 | 460961632 | 1765 | Mycobacterium tuberculosis variant bovis | EMBRAPA BEEF CATTLE | public | Brazil | WGS | PCR | GENOMIC | PAIRED | ILLUMINA | Illumina HiSeq 2500 | |
SRR13015804 | ■■□■■■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■□■□□□□□ | 676773677777200 | 232433462523246231553532 | 324653262315552 | 232433462523 | BOV_1 | 698 | SB0295 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 01/03/2021 00:10 | 434536243 | 1765 | Mycobacterium tuberculosis variant bovis | EMBRAPA BEEF CATTLE | public | Brazil | WGS | PCR | GENOMIC | PAIRED | ILLUMINA | Illumina HiSeq 2500 | |
SRR13015805 | ■■□■■■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■□■□□□□□ | 676773677777200 | 232425354324445231344442 | 324534452313442 | 232425354324 | BOV_1 | 698 | SB0295 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 01/03/2021 00:10 | 481907128 | 1765 | Mycobacterium tuberculosis variant bovis | EMBRAPA BEEF CATTLE | public | Brazil | WGS | PCR | GENOMIC | PAIRED | ILLUMINA | Illumina HiSeq 2500 | |
SRR13015806 | ■■□■■■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■■■□□□□□ | 676773677777600 | 232525153323445331444542 | 325533453314452 | 232525153323 | BOV_1 | 481 | SB0121 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 01/03/2021 00:10 | 487636113 | 1765 | Mycobacterium tuberculosis variant bovis | EMBRAPA BEEF CATTLE | public | Brazil | WGS | PCR | GENOMIC | PAIRED | ILLUMINA | Illumina HiSeq 2500 | |
SRR13015807 | ■■□■■■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■□■□□□□□ | 676773677777200 | 232533354323445331422242 | 325533453314222 | 232533354323 | BOV_1 | 698 | SB0295 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 01/03/2021 00:10 | 395042705 | 1765 | Mycobacterium tuberculosis variant bovis | EMBRAPA BEEF CATTLE | public | Brazil | WGS | PCR | GENOMIC | PAIRED | ILLUMINA | Illumina HiSeq 2500 | |
SRR13015808 | ■■□■■■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■□■□□□□□ | 676773677777200 | 232433152524415231255552 | 324554452312552 | 232433152524 | BOV_1 | 698 | SB0295 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 01/03/2021 00:10 | 420031657 | 1765 | Mycobacterium tuberculosis variant bovis | EMBRAPA BEEF CATTLE | public | Brazil | WGS | PCR | GENOMIC | PAIRED | ILLUMINA | Illumina HiSeq 2500 | |
SRR13015809 | ■■□■■■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■□■□□□□□ | 676773677777200 | 222424143322422-31343432 | 22443242-313442 | 222424143322 | BOV_1 | 698 | SB0295 | Drug-resistant: Pyrazinamide (R) | lineageBOV;lineage4.1.1.1 | 4.2.1.1.1.1.1.1.i2 | bovis | 01/03/2021 00:10 | 307716611 | 1765 | Mycobacterium tuberculosis variant bovis | EMBRAPA BEEF CATTLE | public | Brazil | WGS | PCR | GENOMIC | PAIRED | ILLUMINA | Illumina HiSeq 2500 | |
SRR13015810 | ■■□■■■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■□■□□□□□ | 676773677777200 | 222413243322445321342422 | 224432453213442 | 222413243322 | BOV_1 | 698 | SB0295 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 01/03/2021 00:10 | 504834107 | 1765 | Mycobacterium tuberculosis variant bovis | EMBRAPA BEEF CATTLE | public | Brazil | WGS | PCR | GENOMIC | PAIRED | ILLUMINA | Illumina HiSeq 2500 | |
SRR13046668 | ■■□□■■■■□■■■■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 636773777777600 | 232524451223-452214-4321 | 325523-52214-31 | 232524451223 | BOV_1 | 997 | SB0822 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/11/2020 11:23 | 457115078 | 1765 | Mycobacterium tuberculosis variant bovis | EMBRAPA BEEF CATTLE | public | Brazil | WGS | PCR | GENOMIC | PAIRED | ILLUMINA | Illumina HiSeq 2500 | |
SRR13046669 | ■■□■■■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■□■□□□□□ | 676773677777200 | 222335262323355331342542 | 223633353313452 | 222335262323 | BOV_1 | 698 | SB0295 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/11/2020 11:23 | 367390669 | 1765 | Mycobacterium tuberculosis variant bovis | EMBRAPA BEEF CATTLE | public | Brazil | WGS | PCR | GENOMIC | PAIRED | ILLUMINA | Illumina HiSeq 2500 | |
SRR13046670 | ■■□□■■■■□■■■■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 636773777777600 | 232336151222-562214-3252 | 323522-62214-22 | 232336151222 | BOV_1 | 997 | SB0822 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/11/2020 11:23 | 503585016 | 1765 | Mycobacterium tuberculosis variant bovis | EMBRAPA BEEF CATTLE | public | Brazil | WGS | PCR | GENOMIC | PAIRED | ILLUMINA | Illumina HiSeq 2500 | |
SRR13046671 | ■□□■■■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■□■□□□□□ | 476773677777200 | 232414353324425231444242 | 324534452314422 | 232414353324 | BOV | 3510 | SB1190 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/11/2020 11:23 | 476636488 | 1765 | Mycobacterium tuberculosis variant bovis | EMBRAPA BEEF CATTLE | public | Brazil | WGS | PCR | GENOMIC | PAIRED | ILLUMINA | Illumina HiSeq 2500 | |
SRR13046672 | ■■□□■■■■□■■■■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 636773777777600 | 232433151221-563314-5232 | 324521-63314-22 | 232433151221 | BOV_1 | 997 | SB0822 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/11/2020 11:23 | 388217082 | 1765 | Mycobacterium tuberculosis variant bovis | EMBRAPA BEEF CATTLE | public | Brazil | WGS | PCR | GENOMIC | PAIRED | ILLUMINA | Illumina HiSeq 2500 | |
SRR13046673 | ■■□■■■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■□■□□□□□ | 676773677777200 | 232426154323442231354242 | 324533422313522 | 232426154323 | BOV_1 | 698 | SB0295 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/11/2020 11:23 | 599007951 | 1765 | Mycobacterium tuberculosis variant bovis | EMBRAPA BEEF CATTLE | public | Brazil | WGS | PCR | GENOMIC | PAIRED | ILLUMINA | Illumina HiSeq 2500 | |
SRR13046674 | ■■□■■■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■□■□□□□□ | 676773677777200 | 232325153422443231344422 | 323542432313442 | 232325153422 | BOV_1 | 698 | SB0295 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/11/2020 11:23 | 634733142 | 1765 | Mycobacterium tuberculosis variant bovis | EMBRAPA BEEF CATTLE | public | Brazil | WGS | PCR | GENOMIC | PAIRED | ILLUMINA | Illumina HiSeq 2500 | |
SRR13046675 | ■□□■□■■■□■■■■■■□■■■■■■■■■■■■■■■□■■■■■■□□□□□ | 456773777757600 | 222323342322344321012-32 | 2234323432101-2 | 222323342322 | BOV | Orphan | SB1800 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | NA | 19/11/2020 11:23 | 101475631 | 1765 | Mycobacterium tuberculosis variant bovis | EMBRAPA BEEF CATTLE | public | Brazil | WGS | PCR | GENOMIC | PAIRED | ILLUMINA | Illumina HiSeq 2500 | |
SRR13046676 | ■■□□■■■■□■■■■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 636773777777600 | 232423141223-452211-2422 | 324423-52211-42 | 232423141223 | BOV_1 | 997 | SB0822 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/11/2020 11:23 | 450924859 | 1765 | Mycobacterium tuberculosis variant bovis | EMBRAPA BEEF CATTLE | public | Brazil | WGS | PCR | GENOMIC | PAIRED | ILLUMINA | Illumina HiSeq 2500 | |
SRR13046677 | ■■□■■■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■□■□□□□□ | 676773677777200 | 232423252322442221344422 | 324532422213442 | 232423252322 | BOV_1 | 698 | SB0295 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/11/2020 11:23 | 650782074 | 1765 | Mycobacterium tuberculosis variant bovis | EMBRAPA BEEF CATTLE | public | Brazil | WGS | PCR | GENOMIC | PAIRED | ILLUMINA | Illumina HiSeq 2500 | |
SRR13046678 | ■■□□■■■■□■■■■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 636773777777600 | 232423351224-562314-5522 | 324524-62314-52 | 232423351224 | BOV_1 | 997 | SB0822 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/11/2020 11:23 | 478126436 | 1765 | Mycobacterium tuberculosis variant bovis | EMBRAPA BEEF CATTLE | public | Brazil | WGS | PCR | GENOMIC | PAIRED | ILLUMINA | Illumina HiSeq 2500 | |
SRR13046679 | ■■□□■■■■□■■■■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 636773777777600 | 232423341222-452212-2442 | 324422-52212-42 | 232423341222 | BOV_1 | 997 | SB0822 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/11/2020 11:23 | 517876737 | 1765 | Mycobacterium tuberculosis variant bovis | EMBRAPA BEEF CATTLE | public | Brazil | WGS | PCR | GENOMIC | PAIRED | ILLUMINA | Illumina HiSeq 2500 | |
SRR13046680 | ■■□■■■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■□■□□□□□ | 676773677777200 | 232423354322442221444342 | 324532422214432 | 232423354322 | BOV_1 | 698 | SB0295 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/11/2020 11:23 | 496588538 | 1765 | Mycobacterium tuberculosis variant bovis | EMBRAPA BEEF CATTLE | public | Brazil | WGS | PCR | GENOMIC | PAIRED | ILLUMINA | Illumina HiSeq 2500 | |
SRR13046681 | ■■□□■■■■□■■■■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 636773777777600 | 232325451223-552214-2442 | 323523-52214-42 | 232325451223 | BOV_1 | 997 | SB0822 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/11/2020 11:23 | 600866763 | 1765 | Mycobacterium tuberculosis variant bovis | EMBRAPA BEEF CATTLE | public | Brazil | WGS | PCR | GENOMIC | PAIRED | ILLUMINA | Illumina HiSeq 2500 | |
SRR13046682 | ■□□■□■■■□■■■■■■□■■■■■■■■■■■■■■■□■■■■■■□□□□□ | 456773777757600 | 232225354322256231012432 | 322532262310142 | 232225354322 | BOV | Orphan | SB1800 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | NA | 19/11/2020 11:23 | 470623250 | 1765 | Mycobacterium tuberculosis variant bovis | EMBRAPA BEEF CATTLE | public | Brazil | WGS | PCR | GENOMIC | PAIRED | ILLUMINA | Illumina HiSeq 2500 | |
SRR13046683 | ■■□■■■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■■■□□□□□ | 676773677777600 | 222324343323344221244432 | 223433342212442 | 222324343323 | BOV_1 | 481 | SB0121 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/11/2020 11:23 | 634332976 | 1765 | Mycobacterium tuberculosis variant bovis | EMBRAPA BEEF CATTLE | public | Brazil | WGS | PCR | GENOMIC | PAIRED | ILLUMINA | Illumina HiSeq 2500 | |
SRR13046684 | ■■□□■■■■□■■■■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 636773777777600 | NA | NA | NA | BOV_1 | 997 | SB0822 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/11/2020 11:23 | 616405171 | 1765 | Mycobacterium tuberculosis variant bovis | EMBRAPA BEEF CATTLE | public | Brazil | WGS | PCR | GENOMIC | PAIRED | ILLUMINA | Illumina HiSeq 2500 | |
SRR13046685 | ■■□□■■■■□■■■■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 636773777777600 | 232323141223-452212-2342 | 323423-52212-32 | 232323141223 | BOV_1 | 997 | SB0822 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/11/2020 11:23 | 646001171 | 1765 | Mycobacterium tuberculosis variant bovis | EMBRAPA BEEF CATTLE | public | Brazil | WGS | PCR | GENOMIC | PAIRED | ILLUMINA | Illumina HiSeq 2500 | |
SRR13046686 | ■■□■■■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■□■□□□□□ | 676773677777200 | 232513453322444231355222 | 325532442313522 | 232513453322 | BOV_1 | 698 | SB0295 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/11/2020 11:23 | 443859177 | 1765 | Mycobacterium tuberculosis variant bovis | EMBRAPA BEEF CATTLE | public | Brazil | WGS | PCR | GENOMIC | PAIRED | ILLUMINA | Illumina HiSeq 2500 | |
SRR13046687 | ■□□■■■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■□■□□□□□ | 476773677777200 | 232423343423235221342422 | 324443252213442 | 232423343423 | BOV | 3510 | SB1190 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/11/2020 11:23 | 820558079 | 1765 | Mycobacterium tuberculosis variant bovis | EMBRAPA BEEF CATTLE | public | Brazil | WGS | PCR | GENOMIC | PAIRED | ILLUMINA | Illumina HiSeq 2500 | |
SRR13046688 | ■□□□■■□■□■■■■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 432773777777600 | 2323133412234442222--4-2 | 323423442222-42 | 232313341223 | BOV | Orphan | NA | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/11/2020 11:23 | 53330641 | 1765 | Mycobacterium tuberculosis variant bovis | EMBRAPA BEEF CATTLE | public | Brazil | WGS | PCR | GENOMIC | PAIRED | ILLUMINA | Illumina HiSeq 2500 | |
SRR13046689 | ■■□□■■■■□■■■■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 636773777777600 | 232425451222-452313-5242 | 324522-52313-22 | 232425451222 | BOV_1 | 997 | SB0822 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/11/2020 11:23 | 524542103 | 1765 | Mycobacterium tuberculosis variant bovis | EMBRAPA BEEF CATTLE | public | Brazil | WGS | PCR | GENOMIC | PAIRED | ILLUMINA | Illumina HiSeq 2500 | |
SRR5196685 | ■■□■□□■■□■■■■■■□□□□□□■■■■■■■■■■■□■■■■■□□□□□ | 646770077767600 | 2225475253241-2141556262 | 225234121415522 | 222547525324 | BOV | 999 | SB0821 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 23/01/2018 00:00 | 355617364 | 1765 | Mycobacterium tuberculosis variant bovis | INRA | public | France | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina HiSeq 2500 | |
SRR13268339 | ■■□□■□■□□□□□■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 624073777777600 | 232235565322236131455632 | 322632261314562 | 232235565322 | BOV | 1303 | SB0054 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 20/12/2020 07:35 | 137602327 | 1765 | Mycobacterium tuberculosis variant bovis | UNIVERSITY COLLEGE DUBLIN | public | Ireland | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | NextSeq 500 | |
SRR13199719 | ■■□■■□■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■■■□□□□□ | 666773677777600 | 242314275322133231233632 | 423732132312362 | 242314275322 | BOV_1 | 684 | SB0265 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/02/2021 10:33 | 407790345 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13199720 | ■■□■■■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■■■□□□□□ | 676773677777600 | 252324274322647241233332 | 523732672412332 | 252324274322 | BOV_1 | 481 | SB0121 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/02/2021 10:33 | 449647004 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13199721 | ■□□■■■■■□■■■■■□□■■■■□■■■■■■■■■■■■■■■■■□□□□□ | 476763677777600 | 222546465322257231165562 | 225632272311652 | 222546465322 | BOV | 3585 | SB1264 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/02/2021 10:33 | 1854840210 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina HiSeq 1000 | |
SRR13199722 | ■■□■■■■■□■■■■■■□■■■■□□■■■■■■■■■■■■■■■■□□□□□ | 676773637777600 | 222324223322353111223532 | 223232331112252 | 222324223322 | BOV_1 | 3637 | SB1090 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/02/2021 10:33 | 341534171 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13199723 | □■□■■■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■■■□□□□□ | 276773677777600 | 222324244322335231233532 | 223432352312352 | 222324244322 | BOV_1 | 3532 | SB0122 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/02/2021 10:33 | 491188343 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13199724 | ■■□■■■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■■■□□□□□ | 676773677777600 | 252324236322564231233332 | 523332542312332 | 252324236322 | BOV_1 | 481 | SB0121 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/02/2021 10:33 | 519310806 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13199725 | ■■□■■■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■■■□□□□□ | 676773677777600 | 242324234322456241233532 | 423332462412352 | 242324234322 | BOV_1 | 481 | SB0121 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/02/2021 10:33 | 557836728 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13199726 | ■■□□■■■■□■■■□■■□■■■■■■■■■■■■■■■■■■□□■■□□□□□ | 636733777774600 | 242324232322266341013632 | 423332263410162 | 242324232322 | BOV_1 | 3520 | SB1174 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | NA | 19/02/2021 10:33 | 284298991 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13199727 | □■□■■■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■■■□□□□□ | 276773677777600 | 222324235322433431233332 | 223332434312332 | 222324235322 | BOV_1 | 3532 | SB0122 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/02/2021 10:33 | 334752709 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13199728 | ■■□■■■■■□■■■■■□□■■■■□■■■■■■■■■■■■■■■■■□□□□□ | 676763677777600 | 222324244322465241233532 | 223432452412352 | 222324244322 | BOV | 695 | SB0119 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/02/2021 10:33 | 487471411 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13199729 | ■■□■■□■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■■■□□□□□ | 666773677777600 | 232314255322153221233332 | 323532132212332 | 232314255322 | BOV_1 | 684 | SB0265 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/02/2021 10:33 | 398635664 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13199730 | ■■□■■□■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■■■□□□□□ | 666773677777600 | 222324263422743231233332 | 223642732312332 | 222324263422 | BOV_1 | 684 | SB0265 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/02/2021 10:33 | 397291847 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13199731 | □■□■■■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■■■□□□□□ | 276773677777600 | 232324255322336231233432 | 323532362312342 | 232324255322 | BOV_1 | 3532 | SB0122 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/02/2021 10:33 | 306039188 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13199732 | ■■□■■■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■■■□□□□□ | 676773677777600 | 222324233322566231233532 | 223332562312352 | 222324233322 | BOV_1 | 481 | SB0121 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/02/2021 10:33 | 668292649 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13199733 | ■■□□■■■■□■■■□■■□■■■■■■■■■■■■■■■■■■□□■■□□□□□ | 636733777774600 | 262224232322-59321013332 | 622332-93210132 | 262224232322 | BOV_1 | 3520 | SB1174 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | NA | 19/02/2021 10:33 | 154031287 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13199734 | ■■□□■■■■□■■■□■■□■■■■■■■■■■■■■■■■■■□□■■□□□□□ | 636733777774600 | 222324232322255331013432 | 223332253310142 | 222324232322 | BOV_1 | 3520 | SB1174 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | NA | 19/02/2021 10:33 | 437935900 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13199735 | ■■□□■■■■□■■■□■■□■■■■■■■■■■■■■■■■■■□□■■□□□□□ | 636733777774600 | 232324242322277341013532 | 323432273410152 | 232324242322 | BOV_1 | 3520 | SB1174 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | NA | 19/02/2021 10:33 | 450155918 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13199736 | ■□□■■■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■□■□□□□□ | 476773677777200 | 222324236322466241233332 | 223332462412332 | 222324236322 | BOV | 3510 | SB1190 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/02/2021 10:33 | 425486471 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13199737 | ■□□■■■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■□■□□□□□ | 476773677777200 | 222324232322436241233632 | 223332462412362 | 222324232322 | BOV | 3510 | SB1190 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/02/2021 10:33 | 472656942 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13199738 | ■□□■■■■■□■■■■■□□■■■■□■■■■■■■■■■■■■■■■■□□□□□ | 476763677777600 | 222324242322253221233432 | 223432232212342 | 222324242322 | BOV | 3585 | SB1264 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/02/2021 10:33 | 253451486 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13199739 | ■■□■■■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■■■□□□□□ | 676773677777600 | 252324234322557241233532 | 523332572412352 | 252324234322 | BOV_1 | 481 | SB0121 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/02/2021 10:33 | 415201926 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13199740 | ■□□■■■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■□■□□□□□ | 476773677777200 | 242324233322744231233332 | 423332742312332 | 242324233322 | BOV | 3510 | SB1190 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/02/2021 10:33 | 303431851 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13199741 | ■□□■■■■■□■■■■■□□■■■■□■■■■■■■■■■■■■■■■■□□□□□ | 476763677777600 | 222324265322465231233632 | 223632452312362 | 222324265322 | BOV | 3585 | SB1264 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/02/2021 10:33 | 412639447 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13199742 | ■■□□■■■■□■■■□■■□■■■■■■■■■■■■■■■■■■□□■■□□□□□ | 636733777774600 | 222324232322467321013332 | 223332473210132 | 222324232322 | BOV_1 | 3520 | SB1174 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | NA | 19/02/2021 10:33 | 359116823 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13199743 | ■■□■■□■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■■■□□□□□ | 666773677777600 | 232324245322463231233332 | 323432432312332 | 232324245322 | BOV_1 | 684 | SB0265 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/02/2021 10:33 | 338451833 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13199744 | ■□□■■■■■□■■■■■□□■■■■□■■■■■■■■■■■■■■■■■□□□□□ | 476763677777600 | 222324263322245231233532 | 223632252312352 | 222324263322 | BOV | 3585 | SB1264 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/02/2021 10:33 | 313691158 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13199745 | ■■□■■■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■■■□□□□□ | 676773677777600 | 222324242322435231223332 | 223432452312232 | 222324242322 | BOV_1 | 481 | SB0121 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/02/2021 10:33 | 417299366 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13199746 | ■□□■■■■■□■■■■■□□■■■■□■■■■■■■■■■■■■■■■■□□□□□ | 476763677777600 | 222324234322354231233532 | 223332342312352 | 222324234322 | BOV | 3585 | SB1264 | Drug-resistant: Pyrazinamide (R) Streptomycin (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/02/2021 10:33 | 330603712 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13199747 | ■□□■■■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■□■□□□□□ | 476773677777200 | 222324263322255231233532 | 223632252312352 | 222324263322 | BOV | 3510 | SB1190 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/02/2021 10:33 | 253343383 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13199748 | ■■□■□■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■■■□□□□□ | 656773677777600 | 232324242322333241223532 | 323432332412252 | 232324242322 | BOV_1 | Orphan | SB1195 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/02/2021 10:33 | 325198075 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13199749 | ■□□■■■■■□■■■■■□□■■■■□■■■■■■■■■■■■■■■■■□□□□□ | 476763677777600 | 222324236322534241233632 | 223332542412362 | 222324236322 | BOV | 3585 | SB1264 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/02/2021 10:33 | 422177742 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13199750 | ■■□■■■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■□■□□□□□ | 676773677777200 | 222324244322535241233332 | 223432552412332 | 222324244322 | BOV_1 | 698 | SB0295 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/02/2021 10:33 | 452732663 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13199751 | ■■□■■■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■■■□□□□□ | 676773677777600 | 232324234322347241233532 | 323332372412352 | 232324234322 | BOV_1 | 481 | SB0121 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/02/2021 10:33 | 399854838 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13199752 | ■■□□■■■■□■■■□■■□■■■■■■■■■■■■■■■■■■□□■■□□□□□ | 636733777774600 | 242324242322266331013532 | 423432263310152 | 242324242322 | BOV_1 | 3520 | SB1174 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | NA | 19/02/2021 10:33 | 419923367 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13199753 | ■■□■■□■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■■■□□□□□ | 666773677777600 | 222324252322233231233532 | 223532232312352 | 222324252322 | BOV_1 | 684 | SB0265 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/02/2021 10:33 | 230916714 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13199754 | ■■□■□■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■■■□□□□□ | 656773677777600 | 232324253322333231223532 | 323532332312252 | 232324253322 | BOV_1 | Orphan | SB1195 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/02/2021 10:33 | 270042350 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13199755 | ■□□■■■■■□■■■■■□□■■■■□■■■■■■■■■■■■■■■■■□□□□□ | 476763677777600 | 222324234322663231233532 | 223332632312352 | 222324234322 | BOV | 3585 | SB1264 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/02/2021 10:33 | 416451122 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13199756 | ■■□□■■■■□■■■□■■□■■■■■■■■■■■■■■■■■■□□■■□□□□□ | 636733777774600 | 222324242322357341013532 | 223432373410152 | 222324242322 | BOV_1 | 3520 | SB1174 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | NA | 19/02/2021 10:33 | 493298863 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13199757 | ■■□■■■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■■■□□□□□ | 676773677777600 | 222324272322237241223432 | 223732272412242 | 222324272322 | BOV_1 | 481 | SB0121 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/02/2021 10:33 | 300611921 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13199758 | ■■□□■■■■□■■■□■■□■■■■■■■■■■■■■■■■■■□□■■□□□□□ | 636733777774600 | 222324232322567431013632 | 223332574310162 | 222324232322 | BOV_1 | 3520 | SB1174 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | NA | 19/02/2021 10:33 | 499257113 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13199759 | ■■□□■■■■□■■■□■■□■■■■■■■■■■■■■■■■■■□□■■□□□□□ | 636733777774600 | 222324272322444531013732 | 223732445310172 | 222324272322 | BOV_1 | 3520 | SB1174 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | NA | 19/02/2021 10:33 | 466176051 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13199760 | □■□■■■■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■■■□□□□□ | 276773677777600 | 242324255322336231233532 | 423532362312352 | 242324255322 | BOV_1 | 3532 | SB0122 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/02/2021 10:33 | 392053299 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13199761 | ■■□■■□■■□■■■■■■□■■■■□■■■■■■■■■■■■■■■■■□□□□□ | 666773677777600 | 222647561522266231556662 | 226652262315562 | 222647561522 | BOV_1 | 684 | SB0265 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 19/02/2021 10:33 | 2055730610 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina HiSeq 1000 | |
SRR13199762 | ■■□□■■■■□■■■□■■□■■■■■■■■■■■■■■■■■■□□■■□□□□□ | 636733777774600 | 222324232322546331013332 | 223332563310132 | 222324232322 | BOV_1 | 3520 | SB1174 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | NA | 19/02/2021 10:33 | 565854636 | 1765 | Mycobacterium tuberculosis variant bovis | FCUL | public | Portugal | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500167 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 664073777777600 | 222224154322555231233532 | 222532552312352 | 222224154322 | BOV_2 | 683 | SB0140 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 381209350 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500168 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 664073777777600 | 222224232322-57-31233632 | 222332-7-312362 | 222224232322 | BOV_2 | 683 | SB0140 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 342192494 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500169 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 664073777777600 | 222124242322236331233332 | 221432263312332 | 222124242322 | BOV_2 | 683 | SB0140 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 372625028 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500170 | ■■□■■□□□□□□□■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 660073777777600 | 222224234322565421233332 | 222332554212332 | 222224234322 | BOV | Orphan | SB1924 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 513821368 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500171 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■□■■■■■■■■■□□□□□ | 664073777577600 | 242224145322546431233532 | 422432564312352 | 242224145322 | BOV_2 | 1863 | SB0978 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 444287179 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500172 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 664073777777600 | 232224262322-55-31233532 | 322632-5-312352 | 232224262322 | BOV_2 | 683 | SB0140 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 267720603 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500173 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 664073777777600 | 242224262322-54-31233332 | 422632-4-312332 | 242224262322 | BOV_2 | 683 | SB0140 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 691221595 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500174 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 664073777777600 | 242224154322356231233332 | 422532362312332 | 242224154322 | BOV_2 | 683 | SB0140 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 354442084 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500175 | ■■□■■■□■□■■■■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 672773777777600 | 262314242322-64231533332 | 623432-42315332 | 262314242322 | BOV_1 | 3529 | SB0920 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 120304900 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500176 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 664073777777600 | 232224244322-55-31233532 | 322432-5-312352 | 232224244322 | BOV_2 | 683 | SB0140 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 269409142 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500177 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 664073777777600 | 232224244322-43-31233232 | 322432-3-312322 | 232224244322 | BOV_2 | 683 | SB0140 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 237656075 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500178 | ■■□■■□■□□□□□■■□□□■■■■■■■■■■■■■■■■■■■■■□□□□□ | 664061777777600 | 222224244322-45-31232332 | 222432-5-312332 | 222224244322 | BOV | Orphan | SB1046 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 419715265 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500179 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 664073777777600 | 232224243322355221233532 | 322432352212352 | 232224243322 | BOV_2 | 683 | SB0140 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 230659550 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500180 | ■■□■■□■□□□□□□□□□□□■■■■■■■■■■■■■■■□■■■■□□□□□ | 664000777773600 | 222224242322-55-31231432 | 222432-5-312342 | 222224242322 | BOV | Orphan | NA | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 436957305 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500181 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 664073777777600 | 222224254322-53-31233232 | 222532-3-312322 | 222224254322 | BOV_2 | 683 | SB0140 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 408085204 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500182 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 664073777777600 | 232224244322-53-31233332 | 322432-3-312332 | 232224244322 | BOV_2 | 683 | SB0140 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 381340413 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500183 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 664073777777600 | 232224232322-36-31233332 | 322332-6-312332 | 232224232322 | BOV_2 | 683 | SB0140 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 279323644 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500184 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 664073777777600 | 232224254322-36-31233332 | 322532-6-312332 | 232224254322 | BOV_2 | 683 | SB0140 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 445182971 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500185 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 664073777777600 | 242224142322535331233532 | 422432553312352 | 242224142322 | BOV_2 | 683 | SB0140 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 497740030 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500186 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 664073777777600 | 242224242322-46-31233532 | 422432-6-312352 | 242224242322 | BOV_2 | 683 | SB0140 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 471939077 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500187 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 664073777777600 | 242224243322-56-31233332 | 422432-6-312332 | 242224243322 | BOV_2 | 683 | SB0140 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 493815833 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500188 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 664073777777600 | 222224262322-45-31233332 | 222632-5-312332 | 222224262322 | BOV_2 | 683 | SB0140 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 575778886 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500189 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■□■■■■■■■■■□□□□□ | 664073777577600 | 232224132322535431233432 | 322332554312342 | 232224132322 | BOV_2 | 1863 | SB0978 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 320077481 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500190 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 664073777777600 | 222224245321-56-31233532 | 222431-6-312352 | 222224245321 | BOV_2 | 683 | SB0140 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 435438626 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500191 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 664073777777600 | 242224244322-53-31233432 | 422432-3-312342 | 242224244322 | BOV_2 | 683 | SB0140 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 495383723 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500192 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 664073777777600 | 232224252322-44-31233632 | 322532-4-312362 | 232224252322 | BOV_2 | 683 | SB0140 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 318626724 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500193 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 664073777777600 | 222224235322-45-31233432 | 222332-5-312342 | 222224235322 | BOV_2 | 683 | SB0140 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 513567108 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500194 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■■■□■■■□□□□□ | 664073777775600 | 122224264322-56-21233532 | 222632-6-212352 | 122224264322 | BOV_2 | Orphan | SB1186 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 407691832 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500195 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 664073777777600 | 222224242322-37-31233332 | 222432-7-312332 | 222224242322 | BOV_2 | 683 | SB0140 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 529645342 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500196 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■■■□□■■□□□□□ | 664073777774600 | 222224233322-76-31233332 | 222332-6-312332 | 222224233322 | BOV_2 | Orphan | SB1047 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 352531777 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500197 | ■■□■□□□□□□□□□□■□■■■■■■■■■■□■■■■■■■■■■■□□□□□ | 640013776777600 | 222224244322556321233422 | 222432563212342 | 222224244322 | BOV_3 | 1846 | SB0292 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 330264098 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500198 | ■■□■□□□□□□□□□□■□■■■■■■■■■■□■■■■■■■■■■■□□□□□ | 640013776777600 | 232224246322566421233422 | 322432564212342 | 232224246322 | BOV_3 | 1846 | SB0292 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 417477189 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500199 | ■■□■□□□□□□□□□□■□■■■■■■■■■■□■■■■■■■■■■■□□□□□ | 640013776777600 | 222224262322537331233422 | 222632573312342 | 222224262322 | BOV_3 | 1846 | SB0292 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 364313253 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500200 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■■□■■■■□□□□□ | 664073777773600 | 222224222622556331433432 | 222262563314342 | 222224222622 | BOV_2 | 1855 | SB1033 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 704304750 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500201 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 664073777777600 | 222224245322-35-31233532 | 222432-5-312352 | 222224245322 | BOV_2 | 683 | SB0140 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 326324116 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500202 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■■■□■■■□□□□□ | 664073777775600 | 222224242322-45-41233632 | 222432-5-412362 | 222224242322 | BOV_2 | Orphan | SB1186 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 351997883 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500203 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 664073777777600 | 232224152322546321233332 | 322532563212332 | 232224152322 | BOV_2 | 683 | SB0140 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 378757898 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500204 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 664073777777600 | 222224252322-56-21233332 | 222532-6-212332 | 222224252322 | BOV_2 | 683 | SB0140 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 341147036 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500205 | ■■□■■□□□□□□□■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 660073777777600 | 242224263322556341233332 | 422632563412332 | 242224263322 | BOV | Orphan | SB1924 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 259597315 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500206 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■□■□□□■■■■□□□□□ | 664073777643600 | 232224246322467341133532 | 322432473411352 | 232224246322 | BOV_2 | Orphan | SB1809 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 224102466 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500207 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■□■■■■■■■■■□□□□□ | 664073777577600 | 242224152322544231233432 | 422532542312342 | 242224152322 | BOV_2 | 1863 | SB0978 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 224718308 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500208 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 664073777777600 | 222224245322-36-31233532 | 222432-6-312352 | 222224245322 | BOV_2 | 683 | SB0140 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 287611184 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500209 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 664073777777600 | 222224264322-64-31233332 | 222632-4-312332 | 222224264322 | BOV_2 | 683 | SB0140 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 269063686 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500210 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 664073777777600 | 242224263322-45-31233532 | 422632-5-312352 | 242224263322 | BOV_2 | 683 | SB0140 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 419648310 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500211 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 664073777777600 | 222224264322-57-31233532 | 222632-7-312352 | 222224264322 | BOV_2 | 683 | SB0140 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 280590885 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500212 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 664073777777600 | 232124254322446331233332 | 321532463312332 | 232124254322 | BOV_2 | 683 | SB0140 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 484530376 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500213 | ■■□■■■□■□■■■■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 672773777777600 | 222314252322556231233532 | 223532562312352 | 222314252322 | BOV_1 | 3529 | SB0920 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 328557956 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13500214 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 664073777777600 | 242224232322-35-31233332 | 422332-5-312332 | 242224232322 | BOV_2 | 683 | SB0140 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 21/01/2021 19:14 | 377501292 | 1869227 | bacterium | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888745 | ■■□■□□□□□□□□□□■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 640013777777600 | 242224236322563331233321 | 422332533312331 | 242224236322 | BOV_3 | 479 | SB0145 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 11/03/2021 13:18 | 488806404 | 1765 | Mycobacterium tuberculosis variant bovis | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888746 | ■■□■■■■■□■□■■■■□■■■■■■■■■■■■■■■■■■■□■■□□□□□ | 676573777776600 | 222222223322465531233632 | 222232455312362 | 222222223322 | BOV_1 | Orphan | SB1758 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 11/03/2021 13:19 | 404199659 | 1765 | Mycobacterium tuberculosis variant bovis | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888747 | ■■□■■□■□□□□□■■■□■■■■■■■■■■■■■■■■■■■■■■□□□□□ | 664073777777600 | 222224172322463231233432 | 222732432312342 | 222224172322 | BOV_2 | 683 | SB0140 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 11/03/2021 13:18 | 302031710 | 1765 | Mycobacterium tuberculosis variant bovis | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888748 | ■■□■■■■■□■□■■■■□■■■■■■■■■■■□□□■■■■■■■■□□□□□ | 676573777077600 | 222124232222557421233532 | 221322574212352 | 222124232222 | BOV_1 | 778 | SB0327 | Drug-resistant: Pyrazinamide (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | bovis | 11/03/2021 13:18 | 451684905 | 1765 | Mycobacterium tuberculosis variant bovis | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888749 | □■□□□□□□□□□□□□□□■■■■■■■■■■■□■□□□□■■■■■□□□□□ | 200003777207600 | 257324254622267212413421 | 573562272124141 | 257324254622 | BOV_4-CAPRAE | 646 | SB0416 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:21 | 438654616 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888750 | □■□□□□□□□□□□□□□□■■■■■■■■■■■□■■■■■■■■■■□□□□□ | 200003777377600 | 223324235322237233623621 | 233332272336261 | 223324235322 | BOV_4-CAPRAE | 647 | SB0418 | Drug-resistant: Rifampicin (R) | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | canetti | 11/03/2021 13:21 | 448118837 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq |
SRR13888751 | □■□□□□□□□□□□□□□□■■■■■■■■■■■□■□□□□■■■■■□□□□□ | 200003777207600 | 253624254622266232613321 | 536562262326131 | 253624254622 | BOV_4-CAPRAE | 646 | SB0416 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:19 | 501381415 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888752 | □■□□□□□□□□□□□□□□■■■■■■■■■■■□■□□□□■■■■■□□□□□ | 200003777207600 | 243324255422255212213421 | 433542252122141 | 243324255422 | BOV_4-CAPRAE | 646 | SB0416 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:21 | 327287740 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888753 | □■□□□□□□□□□□□□□□■■■■■■■■■■■□■□□□□■■■■■□□□□□ | 200003777207600 | 243524253622256422513421 | 435562264225141 | 243524253622 | BOV_4-CAPRAE | 646 | SB0416 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:19 | 406737609 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888754 | □■□□□□□□□□□□□□□□■■■■■■■■■■■□■□□□□■■■■■□□□□□ | 200003777207600 | 23B324254522256322513521 | 3B3552263225151 | 23B324254522 | BOV_4-CAPRAE | 646 | SB0416 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:19 | 254971506 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888755 | □■□□□□□□□□□□□□□□■■■■■■■■■■■□■□□□□■■■■■□□□□□ | 200003777207600 | 243524254522455222513621 | 435552452225161 | 243524254522 | BOV_4-CAPRAE | 646 | SB0416 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:21 | 406480387 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888756 | □■□□□□□□□□□□□□□□■■□■■■■■■■■□■□□□□■■■■■□□□□□ | 200003377207600 | 233324234622417422513321 | 333362474225131 | 233324234622 | BOV_4-CAPRAE | 644 | SB0415 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:19 | 249777432 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888757 | □■□□□□□□□□□□□□□□■■□■■■■■■■■□■□□□□■■■■■□□□□□ | 200003377207600 | 223524245322416222213321 | 235432462222131 | 223524245322 | BOV_4-CAPRAE | 644 | SB0415 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:21 | 476637457 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888758 | □■□□□□□□□□□□□□□□■■□■■■■■■■■□■□□□□■■■■■□□□□□ | 200003377207600 | 247524236722215212513521 | 475372252125151 | 247524236722 | BOV_4-CAPRAE | 644 | SB0415 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:21 | 408739569 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888759 | □■□□□□□□□□□□□□□□■■□■■■■■■■■□■□□□□■■■■■□□□□□ | 200003377207600 | 223624264622316222513621 | 236662362225161 | 223624264622 | BOV_4-CAPRAE | 644 | SB0415 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:21 | 560287846 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888760 | □■□□□□□□□□□□□□□□■■□■■■■■□□□□□□□□□□□□□□□□□□□ | 200003370000000 | 233324236422516412413521 | 333342564124151 | 233324236422 | BOV_4-CAPRAE | 1108 | SB1908 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:21 | 501314759 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888761 | □■□□□□□□□□□□□□□□■■□■■■■■■■■□■□□□□■■■■■□□□□□ | 200003377207600 | 233524236622317212613621 | 335362372126161 | 233524236622 | BOV_4-CAPRAE | 644 | SB0415 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:19 | 531830366 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888762 | □■□□□□□□□□□□□□□□■■■■■□□■■■■□■□□□□■■■■■□□□□□ | 200003717207600 | 233324235522236232513621 | 333352262325161 | 233324235522 | BOV_4-CAPRAE | 645 | SB0157 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:19 | 458433749 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888763 | □■□□□□□□□□□□□□□□■■■■■□□■■■■□■□□□□■■■■■□□□□□ | 200003717207600 | 243624235422436232513621 | 436342462325161 | 243624235422 | BOV_4-CAPRAE | 645 | SB0157 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:19 | 425543017 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888764 | □■□□□□□□□□□□□□□□■■■■■□□■■■■□■□□□□■■■■■□□□□□ | 200003717207600 | 233424275222236232513621 | 334722262325161 | 233424275222 | BOV_4-CAPRAE | 645 | SB0157 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:19 | 679953773 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888765 | □■□□□□□□□□□□□□□□■■■■■■■■■■■□■□□□□■■■■■□□□□□ | 200003777207600 | 243424255322235212613321 | 434532252126131 | 243424255322 | BOV_4-CAPRAE | 646 | SB0416 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:19 | 304580380 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888766 | □■□□□□□□□□□□□□□□■■■■■□□■■■■□■□□□□■■■■■□□□□□ | 200003717207600 | 243324255222336232513621 | 433522362325161 | 243324255222 | BOV_4-CAPRAE | 645 | SB0157 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:19 | 594242527 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888767 | □■□□□□□□□□□□□□□□■■□■■■■■■■■□■□□□□■■■■■□□□□□ | 200003377207600 | 234324274322515222513621 | 343732552225161 | 234324274322 | BOV_4-CAPRAE | 644 | SB0415 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:19 | 506718812 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888768 | □■□□□□□□□□□□□□□□■■■■■□□■■■■□■□□□□■■■■■□□□□□ | 200003717207600 | 223524235222335212513621 | 235322352125161 | 223524235222 | BOV_4-CAPRAE | 645 | SB0157 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:19 | 409733043 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888769 | □■□□□□□□□□□□□□□□■■□■■■■■■■■□■□□□□■■■■■□□□□□ | 200003377207600 | 227324235322215222513421 | 273332252225141 | 227324235322 | BOV_4-CAPRAE | 644 | SB0415 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:19 | 363381330 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888770 | □■□□□□□□□□□□□□□□■■■■■□□■□□□□□□□□□□□□□□□□□□□ | 200003710000000 | 223624255522236232413421 | 236552262324141 | 223624255522 | BOV_4-CAPRAE | 3716 | SB1081 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:19 | 479454849 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888771 | □■□□□□□□□□□□□□□□■■■■■□□■□□□□□□□□□□□□□□□□□□□ | 200003710000000 | 233524234322236222413421 | 335332262224141 | 233524234322 | BOV_4-CAPRAE | 3716 | SB1081 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:19 | 501561120 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888772 | □■□□□□□□□□□□□□□□■■□■■■■■■■■□■□□□□■■■■■□□□□□ | 200003377207600 | 226624233322416222413621 | 266332462224161 | 226624233322 | BOV_4-CAPRAE | 644 | SB0415 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:19 | 455217269 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888773 | □■□□□□□□□□□□□□□□■■■■■□□■□□□□□□□□□□□□□□□□□□□ | 200003710000000 | 243324234422234222413521 | 433342242224151 | 243324234422 | BOV_4-CAPRAE | 3716 | SB1081 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:19 | 397498763 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888774 | □■□□□□□□□□□□□□□□■■■■■■■■■■■□■■■■■■■■■■□□□□□ | 200003777377600 | 225514275322435112323321 | 255732451123231 | 225514275322 | BOV_4-CAPRAE | 647 | SB0418 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:19 | 508226864 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888775 | □■□□□□□□□□□□□□□□■■■■■□□■■■■□■□□□□■■■■■□□□□□ | 200003717207600 | 223324245222535212613421 | 233422552126141 | 223324245222 | BOV_4-CAPRAE | 645 | SB0157 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:19 | 412885897 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888776 | □■□□□□□□□□□□□□□□■■■■■■■■■■■□■■■■□□□■■■□□□□□ | 200003777361600 | 223424244422236232523421 | 234442262325241 | 223424244422 | BOV_4-CAPRAE | Orphan | SB1902 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:19 | 370098113 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888777 | □■□□□□□□□□□□□□□□■■■■■□□■■■■□■□□□□■■■■■□□□□□ | 200003717207600 | 233324253222236222413421 | 333522262224141 | 233324253222 | BOV_4-CAPRAE | 645 | SB0157 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:19 | 358846830 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888778 | □■□□□□□□□□□□□□□□■■■■■■■■■■■□■■■■■■■■■■□□□□□ | 200003777377600 | 223424265522336423423321 | 234652364234231 | 223424265522 | BOV_4-CAPRAE | 647 | SB0418 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:19 | 510084752 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888779 | □■□□□□□□□□□□□□□□■■■■■□□■■■■□■□□□□■■■■■□□□□□ | 200003717207600 | 243324266222436212513521 | 433622462125151 | 243324266222 | BOV_4-CAPRAE | 645 | SB0157 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:21 | 568211449 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888780 | □■□□□□□□□□□□□□□□■■□■■■■■■■■□■□□□□■■■■■□□□□□ | 200003377207600 | 23A524232522415222413521 | 3A5352452224151 | 23A524232522 | BOV_4-CAPRAE | 644 | SB0415 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:21 | 434416245 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888781 | □■□□□□□□□□□□□□□□■■■■■■■■■■■□■■■■■■■■■■□□□□□ | 200003777377600 | 223424234522-34212223421 | 234352-42122241 | 223424234522 | BOV_4-CAPRAE | 647 | SB0418 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:19 | 442179696 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888782 | □■□□□□□□□□□□□□□□■■□■■■■■■■■□■□□□□■■■■■□□□□□ | 200003377207600 | 22A424244422215222413521 | 2A4442252224151 | 22A424244422 | BOV_4-CAPRAE | 644 | SB0415 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:19 | 469441833 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888783 | □■□□□□□□□□□□□□□□■■■■■■■■■■■□■■■■■■■■■■□□□□□ | 200003777377600 | 225324252322435432423321 | 253532454324231 | 225324252322 | BOV_4-CAPRAE | 647 | SB0418 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:21 | 520135427 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888784 | □■□□□□□□□□□□□□□□■■■■■■■■■■■□■■■■■■■■■■□□□□□ | 200003777377600 | 223414263622434112423521 | 234662441124251 | 223414263622 | BOV_4-CAPRAE | 647 | SB0418 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:19 | 414435733 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888785 | □■□□□□□□□□□□□□□□■■□■■■■■□□□□□□□□□□□□□□□□□□□ | 200003370000000 | 239324252422-15222313421 | 393542-52223141 | 239324252422 | BOV_4-CAPRAE | 1108 | SB1908 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:21 | 349489182 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888786 | □■□□□□□□□□□□□□□□■■□■■■■■■■■□■□□□□■■■■■□□□□□ | 200003377207600 | 22A324245422316222413521 | 2A3442362224151 | 22A324245422 | BOV_4-CAPRAE | 644 | SB0415 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:19 | 359631706 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888787 | □■□□□□□□□□□□□□□□■■■■■□□■■■■□■□□□□■■■■■□□□□□ | 200003717207600 | 243524254222236222413321 | 435522262224131 | 243524254222 | BOV_4-CAPRAE | 645 | SB0157 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:42 | 376895352 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888788 | □■□□□□□□□□□□□□□□■■■■■□□■■■■□■□□□□■■■■■□□□□□ | 200003717207600 | 243624254222236212613621 | 436522262126161 | 243624254222 | BOV_4-CAPRAE | 645 | SB0157 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:42 | 502822103 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888789 | □■□□□□□□□□□□□□□□■■■■■■■■■■■□■■■■■■■■■■□□□□□ | 200003777377600 | 244324244412336222223321 | 443442362222231 | 244324244412 | BOV_4-CAPRAE | 647 | SB0418 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:19 | 492279425 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888790 | □■□□□□□□□□□□□□□□■■■■■■■■■■■□■□□□□■■■■■□□□□□ | 200003777207600 | 24A624252422356222213321 | 4A6542362222131 | 24A624252422 | BOV_4-CAPRAE | 646 | SB0416 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:19 | 477414723 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888791 | □■□□□□□□□□□□□□□□■■■■■□□■■■■□■□□□□■■■■■□□□□□ | 200003717207600 | 243624253222236212413321 | 436522262124131 | 243624253222 | BOV_4-CAPRAE | 645 | SB0157 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:19 | 428400553 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888792 | □■□□□□□□□□□□□□□□■■■■■■■■■■■□■□□□□■■■■■□□□□□ | 200003777207600 | 243224265622315222413621 | 432662352224161 | 243224265622 | BOV_4-CAPRAE | 646 | SB0416 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:18 | 407260309 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888793 | □■□□□□□□□□□□□□□□■■□■■■■■■■■□■□□□□■■■■■□□□□□ | 200003377207600 | 223424254522516332413421 | 234552563324141 | 223424254522 | BOV_4-CAPRAE | 644 | SB0415 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:42 | 369580091 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888794 | □■□□□□□□□□□□□□□□■■■■■□□■■■■□■□□□□■■■■■□□□□□ | 200003717207600 | 223524233222237222613521 | 235322272226151 | 223524233222 | BOV_4-CAPRAE | 645 | SB0157 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:21 | 452717295 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888795 | □■□□□□□□□□□□□□□□■■□□□■■■■■■□■■■■■■■■■■□□□□□ | 200003077377600 | 223524275722233223623521 | 235772232236251 | 223524275722 | BOV_4-CAPRAE | 3718 | SB1199 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:21 | 483046300 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888796 | □■□□□□□□□□□□□□□□■■■■■□□■■■■□■□□□□■■■■■□□□□□ | 200003717207600 | 243424233422234222413421 | 434342242224141 | 243424233422 | BOV_4-CAPRAE | 645 | SB0157 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:18 | 287428500 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888797 | □■□□□□□□□□□□□□□□■■□□□■■■■■■□■■■■■■■■■■□□□□□ | 200003077377600 | 246424234522236333523521 | 464352263335251 | 246424234522 | BOV_4-CAPRAE | 3718 | SB1199 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:42 | 467219400 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888798 | □■□□□□□□□□□□□□□□■■■■■■■■■■■□■□□□□■■■■■□□□□□ | 200003777207600 | 245524253522435322213321 | 455552453222131 | 245524253522 | BOV_4-CAPRAE | 646 | SB0416 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:21 | 313494683 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq | |
SRR13888799 | □■□□□□□□□□□□□□□□■■□■■■■■■■■□■□□□□■■■■■□□□□□ | 200003377207600 | 224424243422316422213321 | 244442364222131 | 224424243422 | BOV_4-CAPRAE | 644 | SB0415 | Sensitive: NA | lineageBOV | 4.2.1.1.1.1.1.1.i2 | caprae | 11/03/2021 13:42 | 256039138 | 115862 | Mycobacterium tuberculosis variant caprae | USDA-NVSL-DBPL | public | USA | WGS | RANDOM | GENOMIC | PAIRED | ILLUMINA | Illumina MiSeq |
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