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Please Enter your Data
AS a
CSV
or
TSV
file (see
example
)
OR directly by filling the following field:
#ExampleID;Spoligotype;24-loci MIRU-VNTR 1;477777777413071;254326223643614361261136 2;477606317413071;213425133532614361261136 3;770777777777671; 4;777777404760771; 5;nnnnnnonnnnoooooonnnnnonnnnnoooononnonnnnnn;254-262235139423212B3327 6;1111111111111111111111111111000010111110111; 7;nnnnnnonnnnoooooonnnnnonnnnnoooononnonnnnnn; 8;nnnnnnonnnnoooooonnnnnonnnnnoooononnon...nn;
The file can contain a header (beginning with "#" symbol) then one strain per line with no spaces or empty lines.
Please note that genotyping data format corresponds to
SITVIT2 nomenclature
.
A maximum of 5000 characters is allowed. No limit is set when using the
command line tool
.
Select a model (algorithm):
Binary rules
Decision tree
Evolutionary algorithm
MIRU-VNTR based lineage (RuleTB)
Select other option(s):
Curated Clade
SNP-based Lineage
Spoligotype International Type (SIT)
Country distribution
Select a delimiter:
semicolon
comma
tabulation
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Institut Pasteur de la Guadeloupe
. All rights reserved.